an oxidized electron donor

a reduced electron donor

a deaminated amino group acceptor

an aminated amino group acceptor

Charged-LEU-tRNAs

LEU-tRNAs

a 2-oxo acid

an amino acid

an acyl-CoA

a carboxylate

an oxidized ferredoxin [iron-sulfur] cluster

a reduced ferredoxin [iron-sulfur] cluster

NAD(P)H

NAD(P)+

an L-tyrosyl-[tRNAtyr]

a tRNAtyr

(2Z,4Z)-2-hydroxy-5-carboxymuconate-6-semialdehyde

4α,14α-dimethyl-porifersta-8,25(27)-dienol

2-amino-4,5-dihydroxy-6-oxo-7-(phosphooxy)heptanoate

4-methylcyclohex-1,5-diene-1-carbonyl-CoA

isoshowacene

2-hydroxyhexadecanal

16-sinapoyloxypalmitate

3-methylquinolin-2-ol

(22R)-hydroxycholesterol

N-(2-methylpropyl)hydroxylamine

chloroeremomycin

3-hydroxy-3-methylbutanoate

2',3',4'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2',3'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

2'-O-methyl-rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tetracyclic spinosyn pseudoaglycone

rhamnosyl tricyclic spinosyn pseudoaglycone

spinosyn tricyclic macrolactone

11-dehydro-15-oxo spinosyn macrolactone

15-oxo spinosyn macrolactone

spinosyn macrolactone

diethylamine N-oxide

triethylamine N-oxide

UDP-2-acetamido-2-deoxy-α-D-ribo-hex-3-uluronate

nitroxyl

trans,octacis-decaprenylphospho-β-D-arabinofuranose

1,3-dihydro-2H-imidazol-2-one

2-phenylethyl β-D-glucopyranoside

formyl hopane

ribosyl hopane

adenosyl hopane

(2Z)-2-hydroxypenta-2,4-dienoate

(2S,4S)-4-hydroxy-2,3,4,5-tetrahydrodipicolinate

(2Z)-2,4-dihydroxypent-2-enoate

(2E,7Z,10Z,13Z,16Z,19Z)-docosahexaenoyl-CoA

(3R,5Z,8Z,11Z,14Z,17Z)-3-hydroxydocosapentaenoyl-CoA

(5Z,8Z,11Z,14Z,17Z)-3-oxodocosapentaenoyl-CoA

(+)-3'-hydroxylarreatricin

(+)-larreatricin

2-trans,4-trans-xanthoxin

1,2-dihydro-β-NADP

(2S,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

enol-phenylpyruvate

ammonia

(2S,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

xanthine

H₂O

γ-L-glutamyl 5-phosphate

oxaloacetate

1-deoxy-L-glycero-tetrulose 4-phosphate

5'-phosphoribosyl-4-(N-succinocarboxamide)-5-aminoimidazole

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxylate

CO₂

citrate

(E)-3-(methoxycarbonyl)pent-2-enedioate

orotidine 5'-phosphate

(S)-2-acetolactate

(S)-2-aceto-2-hydroxybutanoate

(R)-2,3-dihydroxy-3-methylpentanoate

urea

carboxyphosphate

carbamoyl phosphate

anthranilate

N-(5-phosphoribosyl)-anthranilate

(R)-4'-phosphopantothenate

(R)-pantothenate

5-amino-1-(5-phospho-β-D-ribosyl)imidazole

2-(formamido)-N¹-(5-phospho-β-D-ribosyl)acetamidine

phosphoenolpyruvate

succinate semialdehyde

D-gluconate 6-phosphate

canavaninosuccinate

O-ureido-L-homoserine

L-arginino-succinate

acetyl phosphate

β-D-ribosylnicotinate

β-nicotinate D-ribonucleotide

α-D-glucosamine 1-phosphate

S-ribosyl-L-homocysteine

oxalosuccinate

(S)-dihydroorotate

urocanate

4-imidazolone-5-propanoate

N-acetylglutamyl-phosphate

N-acetyl-L-glutamate 5-semialdehyde

4-methyl-2-oxopentanoate

(S)-3-methyl-2-oxopentanoate

3-methyl-2-oxobutanoate

glycerone phosphate

3-dehydroshikimate

shikimate

2-dehydropantoate

S-methyl-5'-thioadenosine

S-adenosyl 3-(methylsulfanyl)propylamine

(2S)-2-isopropylmalate

L-canavanine

3-deoxy-D-manno-octulosonate 8-phosphate

porphobilinogen

5-aminolevulinate

(2R,3S)-3-isopropylmalate

2-isopropylmaleate

(E)-4-hydroxy-3-methylbut-2-en-1-yl diphosphate

prenyl diphosphate

isopentenyl diphosphate

N¹-(5-phospho-β-D-ribosyl)glycinamide

5-phospho-β-D-ribosylamine

5-enolpyruvoyl-shikimate 3-phosphate

2-oxovalerate

3-ethylmalate

(2S)-2-isopropyl-3-oxosuccinate

(S)-4-amino-5-oxopentanoate

2-C-methyl-D-erythritol 4-phosphate

shikimate 3-phosphate

N-succinyl-2-amino-6-ketopimelate

N-succinyl-L,L-2,6-diaminopimelate

acetoacetate

(indol-3-yl)pyruvate

(R)-4-phosphopantoate

N⁵-carboxyaminoimidazole ribonucleotide

N-acetyl-β-D-glucosamine-1,6-anhydro-N-acetyl-β-D-muramate

2-maleylacetate

3-amino-1-hydroxyacetone 1-phosphate

N²-formyl-N¹-(5-phospho-β-D-ribosyl)glycinamide

(2-hydroxyphenyl)acetate

homogentisate

(S)-4-hydroxy-2-oxopentanoate

2-oxopent-4-enoate

2-C-methyl-D-erythritol-2,4-cyclodiphosphate

4-amino-4-deoxychorismate

glycolate

2-phosphoglycolate

DNA without lesion

prephenate

3-deoxy-α-D-manno-2-octulosonate

thiamine phosphate

4-amino-2-methyl-5-(diphosphooxymethyl)pyrimidine

4-amino-2-methyl-5-(phosphooxymethyl)pyrimidine

N-acetyl-D-muramate 6-phosphate

1,6-anhydro-N-acetyl-β-muramate

autoinducer 2

3-dehydroquinate

O-acetyl-L-serine

coproporphyrinogen III

(S)-ureidoglycolate

formamide

5-amino-6-(D-ribitylamino)uracil

2-dehydro-3-deoxy-D-gluconate 6-phosphate

6-phospho D-glucono-1,5-lactone

lipid IV_A

4-hydroxy-2-nonenal

ADP-L-glycero-β-D-manno-heptose

L-histidinol phosphate

imidazole acetol-phosphate

D-erythro-imidazole-glycerol-phosphate

preuroporphyrinogen

D-glycero-β-D-manno-heptose 1-phosphate

D-glycero-β-D-manno-heptose 1,7-bisphosphate

CDP-glycerol

3-deoxy-D-arabino-heptulosonate 7-phosphate

thiamine diphosphate

histidinol

histidinal

(3R,5S)-3-hydroxy-1-pyrroline-5-carboxylate

hydrogen peroxide

(2R,3S)-3-methylmalate

citraconate

(2S)-2-amino-3-oxo-4-phosphooxybutanoate

4-phosphooxy-L-threonine

carbonic acid

lipid A disaccharide (E. coli)

nicotinate adenine dinucleotide

2-iminoacetate

7-carboxy-7-deazaguanine

propanoyl phosphate

ADP-D-glycero-β-D-manno-heptose

(2S,3S)-2,3-dihydroxy-2,3-dihydrobenzoate

isochorismate

3-oxopropanoate

3-hydroxypropanoate

(S)-2,3,4,5-tetrahydrodipicolinate

4'-phosphopantetheine

lipid X

quinolinate

(3R)-3-hydroxy-2-oxo-4 phosphooxybutanoate

glutathione disulfide

3-phosphooxypyruvate

(2R,4S)-2-methyl-2,3,3,4-tetrahydroxytetrahydrofuran

(2R,4S)-2-methyl-2,4-dihydroxydihydrofuran-3-one

4-oxoglutaramate

4-hydroxybenzoate

3-hexaprenyl-4-hydroxybenzoate

urate

toluene

2,3-dihydroxybenzoate

4-aminobenzoate

menadiol

all trans-decaprenyl-2-methoxy-6-1,4-benzoquinol

2-methoxy-6-all trans-octaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-decaprenyl-1,4-benzoquinol

6-methoxy-3-methyl-2-all-trans-octaprenyl-1,4-benzoquinol

caldariellaquinol

3-demethylubiquinol-8

ubiquinol-8

8'-(3,4-dihydroxy-5-alkenyl)phenyl-3-[9'E,11'E,13'Z-pentadecatrienyl]catechol

3-[(8Z,11E,13Z)-pentadeca-8,11,13-trien-1-yl] )catechol

dimeric urushiol peroxide

4-methylphenol

indole

(1S,2R)-1-C-(indol-3-yl)glycerol 3-phosphate

adenine

guanine

AMP

GMP

XMP

IMP

ATP

GTP

ITP

ADP

GDP

IDP

dGDP

dADP

dIDP

dGTP

dITP

dATP

dAMP

dGMP

hypoxanthine

xanthosine

inosine

adenosine

guanosine

2'-deoxyadenosine

2'-deoxyguanosine

2'-deoxyinosine

tetrahydromethanopterin

6-carboxy-5,6,7,8-tetrahydropterin

[1-(2-amino-7-methyl-4-oxo-7,8-dihydro-3H-pteridin-6-yl)]ethyl diphosphate

2-amino-6-[1-hydroxyethyl]-7-methyl-7,8-dihydropterin

(7,8-dihydropterin-6-yl)methyl diphosphate

6-(hydroxymethyl)-7,8-dihydropterin

7,8-dihydroneopterin 3'-triphosphate

cyclic pyranopterin phosphate

molybdopterin

molybdopterin adenine dinucleotide

7,8-dihydropteroate

5,10-methylene-tetrahydromethanopterin

7,8-dihydrofolate monoglutamate

tetrahydropteroyl tri-L-glutamate

5-methyltetrahydropteroyl tri-L-glutamate

MoO₂-molybdopterin cofactor

riboflavin

FMN

6,7-dimethyl-8-(1-D-ribityl)lumazine

uracil

preQ₁

isoguanine

cytidine 2',3'-cyclic monophosphate

uridine 2'3'-cyclic monophosphate

orotate

dUMP

dUTP

CDP

dCDP

UDP

dUDP

uridine 3'-monophosphate

cytidine-3'-monophosphate

CTP

dCTP

UTP

dTTP

dTDP

dTMP

dCMP

CMP-N-acetyl-β-neuraminate

UMP

CMP

uridine

cytidine

2'-deoxyuridine

2'-deoxycytidine

2-phospho-4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

4-(cytidine 5'-diphospho)-2-C-methyl-D-erythritol

dTDP-α-D-glucose

dTDP-4-dehydro-β-L-rhamnose

dTDP-4-dehydro-6-deoxy-α-D-glucopyranose

dTDP-β-L-rhamnose

UDP-N-acetyl-α-D-muramoyl-L-alanyl-D-glutamate

UDP-N-acetyl-α-D-muramoyl-L-alanine

UDP-α-D-galactose

UDP-α-D-glucose

UDP-N-acetyl-α-D-glucosamine-enolpyruvate

UDP-N-acetyl-α-D-muramate

UDP-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysine

UDP-2-N,3-O-bis[(3R)-3-hydroxytetradecanoyl]-α-D-glucosamine

UDP-3-O-(3-hydroxymyristoyl)-α-D-glucosamine

UDP-3-O-[(3R)-3-hydroxymyristoyl]-N-acetyl-α-D-glucosamine

UDP-α-D-galactofuranose

UDP-N-acetyl-α-D-glucosamine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimelate

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanyl-D-alanine

UDP-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-L-lysyl-D-alanine

(S)-1-pyrroline-5-carboxylate

sirohydrochlorin

precorrin-2

precorrin-1

coenzyme A

guanosine 2',3'-cyclic monophosphate

adenosine 2',3'-cyclic monophosphate

8-oxo-GTP

8-oxo-dGTP

5-chloro-5-deoxyribose 1-phosphate

5'-chloro-5'-deoxyadenosine

adenylo-succinate

adenosine 3'-monophosphate

guanosine 3'-monophosphate

5'-deoxyadenosine

1-(5-phospho-β-D-ribosyl)-ATP

1-(5-phospho-β-D-ribosyl)-AMP

ppGpp

pppGpp

cyclic-AMP

CMP-3-deoxy-β-D-manno-octulosonate

2-methylsulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

2-sulfanyl-N⁶-dimethylallyladenosine³⁷ in tRNA

β-nicotinamide D-ribonucleotide

2-hydroxy-dATP

5-hydroxy-CMP

5-hydroxy-CTP

cyclic di-3',5'-guanylate

NAD⁺

NADP⁺

NADH

NADPH

P¹,P⁴-bis(5'-adenosyl) tetraphosphate

5'-deoxy-5'-fluoroadenosine

glycine betaine

caldariellaquinone

(R)-NADHX

(S)-NADHX

nicotinate

thiamine

menadione

pyridoxine 5'-phosphate

pyridoxal 5'-phosphate

pyridoxamine 5'-phosphate

ethene

acetyl-CoA

2-methylacetoacetyl-CoA

linoleoyl-CoA

α-linolenoyl-CoA

malonyl-CoA

succinyl-CoA

3'-dephospho-CoA

ω-carboxy-(9Z)-octadec-9-enoyl-CoA

oleoyl-CoA

3-oxopentanoyl-CoA

acetoacetyl-CoA

16-hydroxypalmitoyl-CoA

stearoyl-CoA

palmitoyl-CoA

18-hydroxystearoyl-CoA

18-hydroxyoleoyl-CoA

pristanoyl-CoA

7-hydroxylauroyl-CoA

lauroyl-CoA

octanoyl-CoA

decanoyl-CoA

propanoyl-CoA

(Z)-15-tetracosenoyl-CoA

phytenoyl-CoA

trans-dienelactone

cis-dienelactone

S-(hydroxymethyl)glutathione

glutathione

(R)-S-lactoylglutathione

2-(2-carboxy-4-methylthiazol-5-yl)ethyl phosphate

2-[(2R,5Z)-2-carboxy-4-methylthiazol-5(2H)-ylidene]ethyl phosphate

4-methyl-5-(2-phosphooxyethyl)thiazole

methanethiol

choline

betaine aldehyde

betaine aldehyde hydrate

agmatine

putrescine

spermidine

(2Z)-2-aminobut-2-enoate

2-aminoprop-2-enoate

2-iminopropanoate

1-oleoyl-2-palmitoyl-phosphatidylglycerol

(2E,6E)-farnesyl diphosphate

pristanate

superoxide

hydroxyl radical

hydrogencarbonate

OH^-

molybdate

chloride

phosphate

diphosphate

triphosphate

Fe³⁺

Fe²⁺

Zn²⁺

ammonium

H⁺

5-chloro-4-hydroxy-2-oxopentanoate

5-chloro-5-deoxy-D-ribonate

2-chloroacetate

5-fluoro-5-deoxy-D-ribose 1-phosphate

N-acetyl-β-neuraminate

2,4-dinitrophenyl-S-glutathione

1-chloro-2,4-dinitrobenzene

preQ₀

2-methoxy-6-(all-trans-octaprenyl)phenol

2-octaprenylphenol

3-(all-trans-octaprenyl)benzene-1,2-diol

(R)-citramalate

S-(4-hydroxy-nonenal-3-yl)-L-cysteinylglycine

(2R)-2,3-dihydroxy-3-methylbutanoate

3-phospho-D-glyceroyl-phosphate

2-phospho-D-glycerate

3-phospho-D-glycerate

sn-glycerol 3-phosphate

2-iminobutanoate

2-iminosuccinate

hydrogen sulfide

oxygen

protoporphyrin IX

coproporphyrinogen I

uroporphyrinogen-I

uroporphyrinogen-III

protoporphyrinogen IX

siroheme

protoheme

L-homocysteine

DNA with lesion

(glutathion-S-yl)-4-hydroxy-2-nonenal

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

L-cysteinylglycine

γ-L-glutamyl-L-cysteine

D-alanyl-D-alanine

L-alanyl-γ-D-glutamyl-meso-diaminopimelate

L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanine

hypoglycin B

L-α-amino-ε-keto-pimelate

carbamate

L-aspartyl-4-phosphate

O-acetyl-L-homoserine

trans-4-hydroxy-L-proline

formyl-L-isoglutamine

N-acetyl-L-ornithine

N-formimino-L-glutamate

N-acetyl-L-glutamate

N-carbamoyl-L-aspartate

3-phospho-L-serine

L-isoglutamine

L-cysteine

L-methionine

L-proline

L-aspartate

L-glutamate

L-arginine

L-glutamine

L-tryptophan

L-asparagine

L-threonine

L-histidine

L-alanine

L-leucine

L-isoleucine

L-valine

L-serine

L-ornithine

L-lysine

L-phenylalanine

L-tyrosine

L,L-diaminopimelate

D-glutamate

D-alanine

glycine

β-alanine

L-citrulline

O-phospho-L-homoserine

L-homoserine

L-aspartate 4-semialdehyde

S-adenosyl-L-methionine

S-adenosyl-L-homocysteine

O-succinyl-L-homoserine

hypoglycin A

L-glutamate-5-semialdehyde

L-canaline

S-(4-hydroxy-nonenal-3-yl)-L-cysteine

meso-diaminopimelate

acetate

(R)-pantoate

7-hydroxylaurate

laurate

octanoate

decanoate

stearate

palmitate

18-hydroxystearate

16-hydroxypalmitate

18-hydroxyoleate

phytenate

oleate

(15Z)-tetracosenoate

linoleate

α-linolenate

(2R,3S)-2-methylisocitrate

(R)-lactate

pyruvate

formate

2-oxoglutarate

2-oxobutanoate

glyoxylate

4-(methylsulfanyl)-2-oxobutanoate

3-phenyl-2-oxopropanoate

3-(4-hydroxyphenyl)pyruvate

(2S,3S)-2-methylcitrate

trans-aconitate

cis-aconitate

cis-2-methylaconitate

D-threo-isocitrate

chorismate

α,ω-9Z-octadecenedioate

fumarate

succinate

(S)-malate

5-amino-1-(5-phospho-D-ribosyl)imidazole-4-carboxamide

5-formamido-1-(5-phospho-D-ribosyl)-imidazole-4-carboxamide

phosphoribulosylformimino-AICAR-phosphate

1-(5-phospho-β-D-ribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imidazole-4-carboxamide

trans,octacis-decaprenyl phosphate

geranyl diphosphate

3-benzyl-3,6 -bis(glutathione)- 6-(hydroxymethyl)-diketopiperazine

3-benzyl-3,6-dihydroxy-6-(hydroxymethyl)-diketopiperazine

α-Kdo-(2->4)-α-Kdo-(2->6)-lipid IV_A

α-Kdo-(2→6)-lipid IV_A

(heptosyl)₂-Kdo₂-lipid A

heptosyl-Kdo₂-lipid A

3-heptaprenyl-4-hydroxybenzoate

3-nonaprenyl-4-hydroxybenzoate

3-octaprenyl-4-hydroxybenzoate

3-decaprenyl-4-hydroxybenzoate

di-trans,octa-cis-undecaprenyl phosphate

di-trans,octa-cis-undecaprenyl diphosphate

all-trans-heptaprenyl diphosphate

all-trans-nonaprenyl diphosphate

all-trans-octaprenyl diphosphate

all-trans-decaprenyl diphosphate

all-trans-hexaprenyl diphosphate

phosphatidylglycerophosphate (1-octadecenoyl(9Z), 2-palmitoyl)

1-(β-D ribofuranosyl)nicotinamide

maltopentaose

maltohexaose

maltotriose

maltotetraose

maltoheptaose

decaprenyl-diphospho-N-acetylmuramoyl-pentapeptide

5-phospho-α-D-ribose 1-diphosphate

D-erythrose 4-phosphate

D-sedoheptulose 7-phosphate

1-(o-carboxyphenylamino)-1'-deoxyribulose 5'-phosphate

4-phospho-D-erythronate

α-D-galactose 1-phosphate

α-D-glucopyranose 1-phosphate

N-acetyl-α-D-glucosamine 1-phosphate

β-D-fructofuranose 1-phosphate

β-D-glucopyranose 1-phosphate

D-fructose 6-phosphate

β-D-fructofuranose 6-phosphate

β-D-fructose 1,6-bisphosphate

α-D-ribose-1-phosphate

2-deoxy-α-D-ribose 1-phosphate

D-xylulose 5-phosphate

1-deoxy-D-xylulose 5-phosphate

aldehydo-D-arabinose 5-phosphate

D-arabinofuranose 5-phosphate

D-ribulose 5-phosphate

D-glyceraldehyde 3-phosphate

undecaprenyldiphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanyl-D-alanine

undecaprenyl-diphospho-N-acetylmuramoyl-L-alanyl-γ-D-glutamyl-L-lysyl- D-alanine

a peptidoglycan dimer (E. faecium, tetrapeptide)

a peptidoglycan dimer (S. aureus)

a peptidoglycan dimer (E. faeciums)

GlcNAc-1,6-anhMurNAc-L-Ala-γ-D-Glu-DAP-D-Ala

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-[(N-acetyl-β-D-glucosaminyl)-(1,4)-]-N-acetyl-α-D-muramoyl-L-alanyl-γ-D-glutamyl-meso-2,6-diaminopimeloyl-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-L-lysyl-(glycyl)₅-D-alanyl-D-alanine

ditrans,octacis-undecaprenyldiphospho-N-acetyl-(N-acetylglucosaminyl)muramoyl-L-alanyl-γ-D-isoglutaminyl-N-(β-D-asparaginyl)-L-lysyl-D-alanyl-D-alanine

a peptidoglycan dimer with pentapeptide stem (meso-diaminopimelate containing)

a peptidoglycan dimer with pentapeptide stems (meso-diaminopimelate containing)

N-acetylmuramate

N-acetyl-α-D-muramoyl-L-alanine(1-)

N-acetyl-α-D-mannosamine

N-acetyl-β-D-glucosamine

α-D-galactopyranose

D-glyceraldehyde

myo-inositol

1D-myo-inositol 3-monophosphate

1D-myo-inositol 1-monophosphate

ethanol

methanol

methylglyoxal

diacetyl

acetaldehyde

formaldehyde